Alan Veliz-Cuba: search on Z-Library

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1

Boolean Models Can Explain Bistability in the lac Operon

Veliz-Cuba, Alan, Stigler, Brandilyn

Journal:

Journal of Computational Biology

Year:

2011

Language:

english

File:

PDF, 354 KB

english, 2011

2

The Neural Ring: An Algebraic Tool for Analyzing the Intrinsic Structure of Neural Codes

Carina Curto, Vladimir Itskov, Alan Veliz-Cuba…

Journal:

Bulletin of Mathematical Biology

Year:

2013

Language:

english

File:

PDF, 1.25 MB

english, 2013

3

ADAM: Analysis of Discrete Models of Biological Systems Using Computer Algebra

Franziska Hinkelmann, Madison Brandon, Bonny Guang, Rustin McNeill, Grigoriy Blekherman, Alan Veliz-Cuba, Reinhard Laubenbacher

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 1.02 MB

english, 2011

4

The Dynamics of Conjunctive and Disjunctive Boolean Network Models

Abdul Salam Jarrah, Reinhard Laubenbacher, Alan Veliz-Cuba

Journal:

Bulletin of Mathematical Biology

Year:

2010

Language:

english

File:

PDF, 390 KB

english, 2010

5

On the computation of fixed points in Boolean networks

Alan Veliz-Cuba, Reinhard Laubenbacher

Journal:

Journal of Applied Mathematics and Computing

Year:

2012

Language:

english

File:

PDF, 415 KB

english, 2012

6

Reduction of Boolean network models

Alan Veliz-Cuba

Journal:

Journal of Theoretical Biology

Year:

2011

Language:

english

File:

PDF, 275 KB

english, 2011

7

On the Relationship of Steady States of Continuous and Discrete Models Arising from Biology

Alan Veliz-Cuba, Joseph Arthur, Laura Hochstetler, Victoria Klomps, Erikka Korpi

Journal:

Bulletin of Mathematical Biology

Year:

2012

Language:

english

File:

PDF, 785 KB

english, 2012

8

Modeling stochasticity and variability in gene regulatory networks

Murrugarra, David, Veliz-Cuba, Alan, Aguilar, Boris, Arat, Seda, Laubenbacher, Reinhard

Journal:

EURASIP Journal on Bioinformatics and Systems Biology

Year:

2012

Language:

english

File:

PDF, 284 KB

english, 2012

9

The Effect of Negative Feedback Loops on the Dynamics of Boolean Networks

Sontag, Eduardo, Veliz-Cuba, Alan, Laubenbacher, Reinhard, Jarrah, Abdul Salam

Journal:

Biophysical Journal

Year:

2008

Language:

english

File:

PDF, 198 KB

english, 2008

10

An Algebraic Approach to Reverse Engineering Finite Dynamical Systems Arising from Biology

Veliz-Cuba, Alan

Journal:

SIAM Journal on Applied Dynamical Systems

Year:

2012

Language:

english

File:

PDF, 285 KB

english, 2012

11

Structure and dynamics of acyclic networks

Veliz-Cuba, Alan, Murrugarra, David, Laubenbacher, Reinhard

Journal:

Discrete Event Dynamic Systems

Year:

2014

Language:

english

File:

PDF, 423 KB

english, 2014

12

Steady state analysis of Boolean molecular network models via model reduction and computational algebra

Alan Veliz-Cuba,Boris Aguilar,Franziska Hinkelmann…

Journal:

BMC Bioinformatics

Year:

2014

Language:

english

File:

PDF, 363 KB

english, 2014

13

Piecewise Linear and Boolean Models of Chemical Reaction Networks

Veliz-Cuba, Alan, Kumar, Ajit, Josić, Krešimir

Journal:

Bulletin of Mathematical Biology

Year:

2014

Language:

english

File:

PDF, 1.15 MB

english, 2014

14

Networks that learn the precise timing of event sequences

Veliz-Cuba, Alan, Shouval, Harel Z., Josić, Krešimir, Kilpatrick, Zachary P.

Journal:

Journal of Computational Neuroscience

Year:

2015

Language:

english

File:

PDF, 1.49 MB

english, 2015

15

Stochastic Models of Evidence Accumulation in Changing Environments

Veliz-Cuba, Alan, Kilpatrick, Zachary P., Josić, Krešimir

Journal:

Year:

2016

Language:

english

File:

PDF, 531 KB

english, 2016

16

Dimension Reduction of Large Sparse AND-NOT Network Models

Veliz-Cuba, Alan, Aguilar, Boris, Laubenbacher, Reinhard

Journal:

Electronic Notes in Theoretical Computer Science

Year:

2015

Language:

english

File:

PDF, 291 KB

english, 2015

17

Identification of control targets in Boolean molecular network models via computational algebra

Murrugarra, David, Veliz-Cuba, Alan, Aguilar, Boris, Laubenbacher, Reinhard

Journal:

BMC Systems Biology

Year:

2015

Language:

english

File:

PDF, 1.16 MB

english, 2015

18

Effects of cell cycle noise on excitable gene circuits

Veliz-Cuba, Alan, Gupta, Chinmaya, Bennett, Matthew R, Josić, Krešimir, Ott, William

Journal:

Physical Biology

Year:

2016

Language:

english

File:

PDF, 1.76 MB

english, 2016

19

Bistability and oscillations in co-repressive synthetic microbial consortia

Sadeghpour, Mehdi, Veliz-Cuba, Alan, Orosz, Gábor, Josić, Krešimir, Bennett, Matthew R.

Journal:

Quantitative Biology

Year:

2017

Language:

english

File:

PDF, 584 KB

english, 2017

20

Evidence Accumulation and Change Rate Inference in Dynamic Environments

Radillo, Adrian E., Veliz-Cuba, Alan, Josić, Krešimir, Kilpatrick, Zachary P.

Journal:

Neural Computation

Year:

2017

Language:

english

File:

PDF, 1.33 MB

english, 2017

21

Dynamics of semilattice networks with strongly connected dependency graph

Veliz-Cuba, Alan, Laubenbacher, Reinhard

Journal:

Year:

2019

Language:

english

File:

PDF, 542 KB

english, 2019

22

The number of fixed points of AND-OR networks with chain topology

Veliz-Cuba, Alan, Geiser, Lauren

Journal:

Involve a Journal of Mathematics

Year:

2019

File:

PDF, 694 KB

2019

23

Evolution of Cellular Differentiation: From Hypotheses to Models

MÃ¡rquez-ZacarÃas, Pedro, Pineau, Rozenn M., Gomez, Marcella, Veliz-Cuba, Alan, Murrugarra, David, Ratcliff, William C., Niklas, Karl J.

Journal:

Trends in Ecology & Evolution

Year:

2020

File:

PDF, 2.01 MB

2020